Documents capsules/doe.4th's word-level DOE/EXEC-DOE entry points, CSV format, and a verified-not-fixed caveat: the rep column doesn't track actual repetition count when n-reps differs from the file's fixed N-REPS=30 constant (cfg is unaffected, only rep is misleading -- use run_id instead). Also surfaces, but does not fix, a real staleness finding in experiments/bare_metal/README.md: its documented L8-DOE/WL-HI/WL-LO entry point and workload-dispatch mechanism does not exist anywhere in the current capsule set. What "DoE" actually names today is three separate mechanisms (doe.4th's word-level DOE, doe-campaign.4th's fleet-touch campaigns, and artemis/init.4th's auto-run ART-STRESS-CAMPAIGN) -- this HOWTO documents only the first, per explicit scope decision. Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
docs/working/ — Living Documentation
Source material for the formal documentation tier. Design notes, DoE logs,
architecture decisions, experiment reports, draft specs — everything not yet
promoted to docs/formal/. See docs/CLAUDE.md for the two-tier model.
Layout
| Directory | Contents |
|---|---|
architecture/ |
System design: physics engine, HAL, heartbeat, pipelining, word-ACL, adaptive systems, getting-started, plus dated design/finding notes for Artemis, Hermes, and the K-PUSH dictionary-shadowing bug. (03-architecture/, getting-started/, heartbeat_csv_export.md) |
experiments/ |
DoE designs and run data. (02-experiments/, campaigns/ = former top-level experiments/, including the l8_attractor_map, l8_validation, doe_2x7, shape_validation, and window_scaling campaigns) |
specifications/ |
Protocol/format specs — currently HOLA_PROTOCOL.adoc. |
hardware/ |
Board bring-up, platform/perf notes — PGO_GUIDE.adoc, PLATFORM_BUILD_GUIDE.adoc, plus performance-profiling/ and platform-integration/ subtrees. |
legal/ |
Patent-adjacent material — HOLD. See legal/README.md. Nothing moved here without Bob's instruction. |
papers/ |
Academic / citable writing: claim tables, anti-claims, null hypothesis, reproducibility, ontology (markdown), SSRN companion (SSRN_companion/), FINAL_REPORT/, published SSRN PDF (published/). |
scratch/ |
Uncategorized working material: governance/meta docs (governance/, ci-cd/, testing-quality/), the full docs/src/ developer-reference tree (src/), asset holding area (assets/). |
archive/ |
Historical / superseded / obsolete records: quality audits, operations, research drafts, session logs, the former docs/archive/ tree (legacy/), artifacts. |
Phase 2 reorganization notes (2026-06-16)
- Moves used
git mv(history preserved). Each moved.md/.adoc/.texfile carries a one-line provenance header noting its original path. - Reorg used directory-level consolidation rather than splitting every
mixed-tag directory file-by-file, to keep companion data (logs, CSVs,
randomization matrices) with the reports they belong to. Per-file status tags
remain authoritative in
docs/INDEX.md. docs/src/landed underscratch/src/as a holding area — it is mixed developer reference that still needs semantic re-filing intoarchitecture/,hardware/, andspecifications/.- Repo-root convention files (
README.md,ROADMAP.md,ONTOLOGY.md,CONTRIBUTING.md,CODE_OF_CONDUCT.md,NOTICE.md) and the docs landing files (docs/CLAUDE.md,docs/INDEX.md,docs/README.md) were left in place. - DELETE candidates: see
docs/DELETE-CANDIDATES.md(nothing deleted).