LithosAnanake/FABRIC-3.md

FABRIC-3.md — bare metal boot

Status: Living working document, opened 2026-09-04 as the successor to FABRIC-2.md (now closed/archival — see its own header). Topic for this document, per direct instruction: bare metal boot — getting LithosAnanke to actually boot on real hardware, not just QEMU. FABRIC-2.md §I.6 (Milestone 8) already named this as the one item that pass couldn't close from a coding session at all, for exactly this reason — it needs a real machine and a human physically present. This document is where that work, and everything downstream of it, gets tracked.

How to use this document going forward. New findings, new punch-list items, and new decisions for bare-metal-boot work get added here, not to FABRIC-2.md. Same discipline every prior document in this series used: write the decision and its reasoning down before building, close items with a dated note citing real evidence, never silently drop a stale claim.

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I.1 — Task 1: merge v2.0.1 into master, verify build/function equivalence

Written up before executing, per direct instruction and this series' own standing discipline.

Why this is task 1. FABRIC-2.md's entire 7-step closure pass (§I.1–§I.5, §I.7, plus today's FABRIC-series rename) happened on the v2.0.1 branch, not master. Before any real bare-metal-boot work starts, that work needs to land where .claude/CLAUDE.md says the project's sole production line actually lives: master. Doing this first, cleanly, before starting new work avoids ever having two divergent lines to reconcile later.

Investigated before writing this up, not assumed:

• git merge-base --is-ancestor master v2.0.1 — true. master (local HEAD d2a0305) is a strict ancestor of v2.0.1 (HEAD b031b80) — v2.0.1 is exactly master plus 47 commits forward, no divergent history on either side. This means the "merge" is a pure fast-forward, not a real three-way merge — nothing to resolve, no conflict possible.
• origin/master carries exactly one commit beyond local master (58c59e8, "Initial commit") that local master hadn't fetched yet — confirmed already contained in v2.0.1's own history (git merge-base --is-ancestor 58c59e8 v2.0.1 — true), so it introduces no discrepancy either.
• master's own tree still has the old FABRIC.md/FABRIC-2.md/FABRIC-3.md naming (unrenamed) — expected, since today's rename commit (b031b80) only exists on v2.0.1 so far. The fast-forward brings the rename to master along with everything else; nothing separate needs doing for it.

Plan:

1. Fast-forward master to v2.0.1's tip (git checkout master && git merge --ff-only v2.0.1) — refuses loudly instead of silently doing a real merge if the ancestor relationship somehow isn't what the investigation above found, so this step re-verifies its own precondition.
2. Push master to origin.
3. Verify build/function equivalence on a genuinely clean tree, not by inference: git clean (after confirming nothing untracked-but-wanted is present), then the full acceptance sequence .claude/CLAUDE.md already mandates for any kernel change — clean qemu on all three architectures, in the foreground, one at a time, each reaching ok> and shutting down cleanly. Since the tree is byte-identical to v2.0.1's post-fast-forward, this is expected to reproduce exactly what v2.0.1's own last acceptance pass already showed — the point of re-running it here is to confirm that expectation holds on master itself, not to assume it from the fast-forward alone.
4. Return to v2.0.1 as the working branch afterward (.claude/CLAUDE.md's own rule: always return to the correct working branch after any out-of-branch work), unless told otherwise.

DONE 2026-09-04, exactly as planned:

1. Committed the write-up above on v2.0.1 first (72c14cb), pushed. This became v2.0.1's new tip.
2. git checkout master && git merge --ff-only v2.0.1 — Fast-forward, d2a0305..72c14cb, confirming the investigated ancestor relationship held exactly as expected; no conflict, no merge commit.
3. git push origin master — origin/master moved 58c59e8..72c14cb.
4. Verified on a genuinely clean master tree, not inferred from the fast-forward:
   • Hosted build (make clean && make): clean compile, zero warnings, same as v2.0.1.
   • Full 3-arch kernel acceptance (clean qemu, amd64/aarch64/riscv64, each in the foreground): all three reached (zuse) ok>/ok> and shut down cleanly, zero build errors, zero unexpected warnings — identical outcome to v2.0.1's own last acceptance pass, confirmed directly rather than assumed. Logs: logs/20260904-113208/amd64/, logs/20260904-113320/aarch64/, logs/20260904-113552/riscv64/.
5. master and v2.0.1 are now identical (72c14cb on both, origin and local). Returned to v2.0.1 as the working branch per plan step 4.

Task 1 closed. master genuinely is the production line again, current through today's FABRIC-series rename and the full FABRIC-2.md §I closure. Bare-metal-boot work (this document's actual topic) starts from here.

I.2 — Task 2: version correction — the v2.0.1 bump and v2.0.0 tag were premature

Direct instruction, 2026-09-04: the LITHOS_VERSION bump to 2.0.1 (and the branch name that followed it) got ahead of the real state — per Makefile.starkernel's own versioning policy (v2.0.0 = QEMU release, even major/LTS; v2.0.1 = the SER5 hardware-track line, RDRAND backend + thumbdrive image goal), claiming 2.0.1 implies hardware-track progress that was never actually verified on real hardware — that verification is precisely FABRIC-3.md's whole open topic (§I.6 in the closed FABRIC-2.md). The current master HEAD is, correctly, still a v2.0.0-class QEMU-only release. "Nothing harmful" — a version-label correction, not a functional rollback.

Found and fixed while correcting this, not left half-done:

• A real gap in the FABRIC-series rename from earlier today: Makefile.starkernel, Kconfig.kernel, scripts/bleach_zuse_img.sh, four proof/*.thy files, and src/starkernel/arch/amd64/isr.S all still had stale FABRIC.md/FABRIC-2.md/FABRIC-3.md citations — the original sweep's file-list only matched --include=*.md/*.c/*.h/*.4th, which silently skipped every file without one of those four extensions. Found by re-grepping with the extensions excluded instead of included. Fixed with the same safe placeholder-substitution technique the original rename used (each file, one pass, ordered FABRIC-3→2→1→0 placeholders then resolved) — verified no double-shifted or broken references remained afterward. .claude/settings.local.json's own historical Bash-permission-grant log (literal past command strings naming the file as it was called at the time) was deliberately left alone — rewriting it would falsify an audit trail, not fix a stale citation.
• ClaudeEXPORT/memories.json/conversations.json also still reference the old names — left untouched on purpose, same reasoning as the memory note on that archive: it's a frozen export, mining material, not live documentation to keep in sync.

Changes:

1. Makefile.starkernel: LITHOS_VERSION ?= 2.0.1 → 2.0.0.
2. The rename-gap fix above (7 files).
3. Verified 3-arch boot (clean qemu, amd64/aarch64/riscv64, each in the foreground): all three show LithosAnanke v2.0.0 in the boot banner (confirmed directly in each serial log, not assumed from the Makefile edit alone), zero build errors, zero unexpected warnings, clean shutdown.
4. Moved the existing v2.0.0 git tag (previously at 2efd7fe, the original QEMU-release milestone commit — that commit and its own message stay fully intact in history, only the tag pointer moves) to the current master/v2.0.1-branch HEAD, per explicit instruction — the prior tag placement was itself part of the same "got ahead of myself" correction, not a separate decision. No remote tag existed yet (git ls-remote --tags origin was empty for v2.0.0), so no destructive remote operation was needed, only a local move-and-push.
5. Follow-up, same day: v2.0.1 (the working branch this and Task 1 happened on) deleted, local and origin — confirmed a strict ancestor of master's new HEAD first, so nothing was lost. master is the repo's only branch from here on.

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II. Three architectures, three different hardware scopes

Per direct instruction, 2026-09-04. The real-hardware targets are not symmetric across architectures — each gets its own section below because the actual scope of "done" is different for each:

• amd64 — genericity is the goal, not just the SER5. The Beelink SER5 is the machine in hand and the development/reference target, but the real requirement is broader: this needs to boot on any x86_64 machine — laptop, desktop, tower, or mini PC — not just one vendor's quirks. SER5-only success is necessary but not sufficient; anything that works only because of an SER5-specific assumption (a particular ACPI table shape, a specific UEFI implementation's quirks) is a bug against this goal, not a deferred nice-to-have.
• aarch64 — Raspberry Pi 5, and only the Raspberry Pi 5. No genericity requirement across aarch64 boards — this is the one and only target for this architecture.
• riscv64 — Milk-V Mars, and only the Milk-V Mars. Same as aarch64: one specific board, not a generic riscv64-SBC goal.

How to use sections III–V below. Same discipline as everything else in this series: plan before building, one section at a time, iterating — not all three architectures in parallel, and not front-loading a complete plan before any real hardware is in front of us. Each section starts with what's already true (existing repo infrastructure, already-decided policy) and what's still genuinely unknown, not assumed.

III. amd64 — generic x86_64 bare metal (reference hardware: Beelink SER5)

Already true, not to be re-derived:

• ROADMAP.md's "Board-by-board hardware rollout" already names this v2.2.0's gate: the generic GPT/FAT32 thumbdrive image (make -f Makefile.starkernel ARCH=amd64 thumbdrive, already built — Makefile.starkernel:1018) flashes to and boots on the real SER5 via its real UEFI, reaching POST + ok>, with the amd64 RDRAND entropy backend (src/starkernel/rng/rng.c, already built and part of master) serving live entropy.
• iso-usb (Makefile.starkernel:1060) is the alternate, novice-friendly path (UEFI isohybrid ISO for tools like GNOME Disks "Restore Disk Image...") — same underlying image, different flashing UX.
• FABRIC-2.md §I.6's own 8-step physical-boot sequence (build ISO, identify the target device, flash it, physically boot, decide an observation method, confirm POST, confirm ok>, document) is the closest thing to an existing plan — but it predates the genericity requirement and was written with no hardware in hand yet.

Decided in conversation, 2026-09-04:

• Observation: HDMI (interactive) + serial (logged transcript), both. The kernel's own VT100 framebuffer console (console.c/vt100.c/framebuffer.c) already gives a real interactive display over HDMI — no new code needed there. Serial capture, if the SER5 exposes a UART header, uses the Raspberry Pi's own GPIO UART as the USB-serial bridge (already available hardware, not a purchase blocker) — this needs the SER5's own UART pins physically identified first (not yet confirmed it has an accessible header at all).
• Genericity is verified by standards-compliance, not a second machine — no second x86_64 box is available right now. The bar is: nothing in the boot path may depend on an SER5-specific assumption (a particular ACPI table shape, a specific UEFI implementation's quirk) — argued by code audit against real UEFI/ACPI standards, not by testing on a second board, until one becomes available. This is a real constraint on the punch list below (item 6), not a deferred nice-to-have.
• Secure Boot: already disabled on this SER5. No signed-loader work needed for this pass — "Secure Boot disabled in firmware setup" is the supported path, documented as such rather than built around.

Punch list, this cadence's actual next steps:

1. Build the generic thumbdrive image: make -f Makefile.starkernel ARCH=amd64 thumbdrive.
2. Flash it to a USB stick (dd, per the target's own existing usage message).
3. Physically inspect the SER5 for an exposed UART header/pins; if present, wire the Raspberry Pi's GPIO UART to it as the serial bridge. If absent, HDMI-only for this pass — not a blocker, just a scope note for step 7's log.
4. Connect HDMI + keyboard to the SER5.
5. Boot the SER5 from the flashed stick (firmware boot-order menu as needed — Secure Boot already disabled, confirmed above, so no signing prompt expected).
6. Code audit pass (can happen before or in parallel with 1–5, doesn't need the hardware in hand): review the amd64 boot path (src/starkernel/boot/uefi_loader.c, arch/amd64/*.c) for anything that assumes SER5-specific hardware rather than standard UEFI/ACPI — this is what "genericity" actually rests on per the decision above, not the SER5 boot succeeding alone.
7. Capture the boot: confirm POST reaches the same 1012/0/0 result QEMU shows, confirm ok>/zuse)ok>, confirm rng: backend = rdrand (live entropy, not the QEMU-only virtio-rng path), save the serial transcript (if wired) the same way logs/ already keeps QEMU's.
8. Mint a Zuse identity on a second thumbdrive on the real SER5, confirm it re-attaches — the same real-hardware round-trip ROADMAP.md's v2.2.0 gate already names.
9. Update this section with results — pass/fail per step, any SER5-specific or genuinely generic-UEFI finding either way, before moving to aarch64.

IV. aarch64 — Raspberry Pi 5

Already true: ROADMAP.md names this v2.4.0's gate: boots on the real board, aarch64 peripheral-RNG backend live, Zuse mint/attach on real media. The peripheral-RNG backend itself is not yet built — today's rng_get_bytes() (src/starkernel/rng/rng.c) only has a virtio-rng path, real on QEMU, meaningless on real Pi 5 hardware (no virtio device there).

Genuinely open, not yet decided:

• Raspberry Pi 5's own boot chain — UEFI (e.g. via the community EDK2 port) or the Pi's native boot flow? This determines whether the existing UEFI-targeted boot code needs a different entry path for this board at all, or just different ACPI/DTB-provided data.
• Which peripheral RNG the Pi 5 actually exposes, and how to read it (memory-mapped peripheral vs. a firmware call) — not yet researched.
• Same observation-method question as amd64 (no QEMU serial socket on real hardware) — possibly shared tooling/approach across both boards once decided once.

V. riscv64 — Milk-V Mars

Already true: ROADMAP.md names this (generically, "Milk-V") as part of v2.5.0's gate: boots on the real board, the Zkr (RNDR) entropy backend live. Same gap as aarch64: rng_get_bytes() has no riscv64 hardware-RNG path today, only virtio-rng.

Genuinely open, not yet decided:

• Milk-V Mars's actual boot chain — this project's QEMU riscv64 target boots via UEFI (EDK2 RISCV_VIRT firmware, confirmed in Makefile.starkernel's own qemu recipe), but real riscv64 SBCs commonly boot via U-Boot + OpenSBI + a devicetree instead of UEFI. Which one the Mars actually uses is not yet confirmed — this is the single most consequential unknown across all three sections, since it could mean this board needs a genuinely different boot entry path, not just different peripheral addresses.
• Zkr/RNDR instruction availability on the Mars's actual CPU (riscv64 Scalar Crypto extension support varies by implementation) — not yet confirmed.
• Same observation-method question as the other two boards.